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Qaagi - Book of Why

Causes

Effects

DNA methylation , which is knownto resultin gene silencing

DNA methylation [ 34(passive) predominantly caused bygene silencing

DNA Methylation Silencing(passive) Is Caused bySilencing of Genes

DNA methylation and microRNA(passive) caused bygene silencing

DNA methylation pathwayleadingto transcriptional gene silencing

chemically synthesized small interfering RNAs ( siRNAs(passive) triggered by10.1371 / journal.pone.0075443 Gene silencing

because DNA methylation is usually perceivedto causegene silencing

RNA - mediated DNA methylation ,leadingto transcriptional gene silencing

DNA methylation of only promoter CGIscausesgene silencing

can play a role in DNA methylationresultingin transcriptional gene silencing

DNA methylation ... a covalent modificationtriggersheritable gene silencing

Aberrant DNA methylation of PROX1causinggene silencing

epigenetic changes , such as DNA methylation or altered miRNA(passive) is frequently caused byGene silencing

the this protein functions as a demethylase to activate transcription as DNA methylationcausesgene silencing

Expression of such hairpin constructs results in the production of double - stranded RNA ( dsRNAtriggeringposttranscriptional gene silencing

DNA methylation and repressive histone modification ... the most common mechanismscausegene silencing

levels of genic CHG and CHH context DNA methylationcan causegene silencing

CpG / CpNpG islands , which are important sites for DNA methylationmay resultin gene silencing

We are also very interested in proteins and processes that act downstream of DNA methylationto causegene silencing

Epigenetic alterations such as DNA methylation and histone modifications , which are frequent events in tumours [ 76might causesilencing of the CaSR gene

DNA methylation involves the chemical modification of cytosine residues in the genome ,generally resultingin gene “ silencing

self - replicative sense transgenes(passive) triggered bygene silencing

MGMT - promoter methylationcausesgene silencing

DNA methylation , in association with histone modifications and chromatin condensation ... a major epigenetic eventcausesgene silencing

DNA hypermethylation is knownto resultin gene silencing

sense , antisense , or double - stranded RNAcausedgene silencing

CIMP or aberrant DNA methylation Transcription inactivation by DNA hypermethylation at promoter CpG islands of tumor - suppressor genes ,causinggene silencing

B ) Induction of siRNAs at the H06 locus induces local DNA methylationleadingto transcriptional gene silencing

Promoter methylation is generally knownto causegene silencing

FXS ... promoter hypermethylationresultsin gene silencing

RNA - directed DNA methylation ( RdDM ) , first discovered in viroid - infected tobacco ... repressive epigenetic modificationscan triggertranscriptional gene silencing

32 Issue 2 , p1713 DNA methylation , especially in promoter regions of tumor suppressor genes ( GST ... the primary mechanismcausesepigenetic gene silencing

ArticleInfo & Metrics PDF AbstractBACKGROUND AND OBJECTIVES : Aberrant promoter methylation targets CpG islandscausinggene silencing

as a plant defence mechanism(passive) can be triggeredGene silencing

histone acetylation adopting gene expressionhistone deacetylation rambling gene silencinghistone methylation and DNA methylationcausinggene silencing

DNA methylation , particularly of the CG islands within genes ’ promoters or upstream regions , is thoughtto causegene silencing

Epigenetic mechanisms , such as promoter methylationmay causea gene silencing

another decade of R&D ... double - stranded RNAcausesgene silencing

the mechanism by which CpG methylation of the MGMT promoter regioninfluencedsilencing of the gene

With expanded repeat number , the FMR1 gene promoter region undergoes DNA methylation at C residues of CpG dinu - cleotidesresultingin gene silencing

in decreased expression of the PMCA1 proteinresultsin decreased expression of the PMCA1 protein

parthenocarpic fruit development in tomatocausesparthenocarpic fruit development in tomato

in an increase in expression of the gene tissue inhibitor of metalloproteinase-1 ( TIMP-1also resultedin an increase in expression of the gene tissue inhibitor of metalloproteinase-1 ( TIMP-1

gain of virulence in a plant pathogen ( 2013causesgain of virulence in a plant pathogen ( 2013

increased DNA synthesis in moderate hypoxiapreventedincreased DNA synthesis in moderate hypoxia

in recent years to an advanced understanding of the mosquito immune response against infections with bacteria and malaria parasiteshas ledin recent years to an advanced understanding of the mosquito immune response against infections with bacteria and malaria parasites

reactivation of viral production [ 47 , 84to preventreactivation of viral production [ 47 , 84

in C. elegans by short antisense RNAs https://doi.org/10.1126/science.1067534 https://doi.org/10.1101/cshperspect.a003731 https://doi.org/10.1073/pnas.0611282104 https://doi.org/10.1016/j.devcel.2009.03.008 Cell fractionation studies on the guinea pig pancreastriggeredin C. elegans by short antisense RNAs https://doi.org/10.1126/science.1067534 https://doi.org/10.1101/cshperspect.a003731 https://doi.org/10.1073/pnas.0611282104 https://doi.org/10.1016/j.devcel.2009.03.008 Cell fractionation studies on the guinea pig pancreas

to down - regulation of protein expression and functionsleadsto down - regulation of protein expression and functions

gain of virulence in a plant pathogen ... , Nature Communications , 4:1349causesgain of virulence in a plant pathogen ... , Nature Communications , 4:1349

in enhanced intracellular calcium concentrations and increased insulin - induced Akt activationATP2B1 ... resultedin enhanced intracellular calcium concentrations and increased insulin - induced Akt activation

beta - cell death and improve the survival and function of isletswill preventbeta - cell death and improve the survival and function of islets

β - cell death and improve the survival and function of isletswill preventβ - cell death and improve the survival and function of islets

to augmentation of HSP-70 protein expression after heat shockleadsto augmentation of HSP-70 protein expression after heat shock

gain of virulence in a plant pathogen , 4 http://dx.doi.org/10.1038/ncomms2354 Dong , S. , Kong , G. , Qutob , D. , Yu , X. , Tang , J. , Kang , J. , Dai , T. , Wang , H. , Gijzen , M. , Wang , Y. ( 2012causesgain of virulence in a plant pathogen , 4 http://dx.doi.org/10.1038/ncomms2354 Dong , S. , Kong , G. , Qutob , D. , Yu , X. , Tang , J. , Kang , J. , Dai , T. , Wang , H. , Gijzen , M. , Wang , Y. ( 2012

in the suppression of insulin resistance in PA - induced insulin resistance model in Huh7 cellscan resultin the suppression of insulin resistance in PA - induced insulin resistance model in Huh7 cells

suppression by WIN of TRPV1-induced TAK1-JNK1 signalingpreventedsuppression by WIN of TRPV1-induced TAK1-JNK1 signaling

formation of a proteinpreventsformation of a protein

transcription , which will lower the amount of mRNA template that can be translated into a proteinwill preventtranscription , which will lower the amount of mRNA template that can be translated into a protein

cryptic RNA polymerase II transcription of these genespreventscryptic RNA polymerase II transcription of these genes

expression of the cryptic mating loci ( HM ) ( reviewed in Kingston et al . ... 1996preventsexpression of the cryptic mating loci ( HM ) ( reviewed in Kingston et al . ... 1996

in tumor suppressor inactivationresultingin tumor suppressor inactivation

fluorescent signals(passive) caused byfluorescent signals

protein production stemming from the detrimental genepreventsprotein production stemming from the detrimental gene

if the transcript level of the introduced transgenes surpassed a gene - specific thresholdwas triggeredif the transcript level of the introduced transgenes surpassed a gene - specific threshold

in generation of Tol - DC that suppressed T cell responses and selectively promoted Treg generationresultedin generation of Tol - DC that suppressed T cell responses and selectively promoted Treg generation

HIV-1 gp120IIIB - induced degeneration of striatal neuronspreventsHIV-1 gp120IIIB - induced degeneration of striatal neurons

HIV-1 gp120(IIIB)-induced degeneration of striatal neuronspreventsHIV-1 gp120(IIIB)-induced degeneration of striatal neurons

HIV-1 gp120(IIIB)-induced degeneration of striatal neuronsJ NeurovirolYear : 201117414921234828 McMahon J , Huang X , Yang J , Komatsu M , Yue Z , Qian J , et alpreventsHIV-1 gp120(IIIB)-induced degeneration of striatal neuronsJ NeurovirolYear : 201117414921234828 McMahon J , Huang X , Yang J , Komatsu M , Yue Z , Qian J , et al

The disappearance of transcripts(passive) was caused byThe disappearance of transcripts

to genome maintenance and controlling a variety of developmental and physiological processescontributingto genome maintenance and controlling a variety of developmental and physiological processes

in Upregulation of GnRHR and IL23R Expression Normal Colon Cell Lines To identify in vivo relevant target genes of NAV3Resultedin Upregulation of GnRHR and IL23R Expression Normal Colon Cell Lines To identify in vivo relevant target genes of NAV3

in reduced expression of MTA-1 , MPP-2 , MMP-9 and vimentin , and increased expression of TIMP-2 , E - cadherin and collagen 1 at the protein and mRNA levelMYH10 ... resultedin reduced expression of MTA-1 , MPP-2 , MMP-9 and vimentin , and increased expression of TIMP-2 , E - cadherin and collagen 1 at the protein and mRNA level

to the inhibition of migration and invasion of NSCLC cells and a significant decrease in the expression of the invasion - related protein MMP-2ledto the inhibition of migration and invasion of NSCLC cells and a significant decrease in the expression of the invasion - related protein MMP-2

TNF - alpha - mediated insulin resistance in cultured human skeletal musclepreventedTNF - alpha - mediated insulin resistance in cultured human skeletal muscle

from TALE - TET1–induced demethylation and not through simple steric hindrance by binding of the TALE fusion protein itselfresultedfrom TALE - TET1–induced demethylation and not through simple steric hindrance by binding of the TALE fusion protein itself

the TNFSF15-stimulation of up - regulation of miR-29b ( Figure ​(Figure3D).3Dpreventedthe TNFSF15-stimulation of up - regulation of miR-29b ( Figure ​(Figure3D).3D

expression strength of the toxic proteins ... Tau[R406W ... or polyQ ... per semight influenceexpression strength of the toxic proteins ... Tau[R406W ... or polyQ ... per se

the TNFSF15-stimulation of up - regulation of miR-29b ( Figure 3Dpreventedthe TNFSF15-stimulation of up - regulation of miR-29b ( Figure 3D

to further genetic instability and dysfunction of the cell cyclemay leadto further genetic instability and dysfunction of the cell cycle

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